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I know that we can use custom atlases. I have an atlas file that is a fusion of the Schaefer 400x17 atlas and Brainnetome's subcortical gray ROIs.
Do you have any stock code for conforming it to t…
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This issue was first reported by @edeutsch in [RTX issue 1699](https://github.com/RTXteam/RTX/issues/1699).
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- [x] modify subcortical parcellation by using functionally defined atlas
- [x] update look-up table
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| Name | Description | Size | Format | URL |
| --- | --- | --- | --- | --- |
| World Bank - Light Every Night | Light Every Night - World Bank Nightime Light Data – provides open access to all night…
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Using the newest version of surf-ice, I've loaded the mni152_209.curv file, and overlaid a NIFTI file containing an subcortical ROI that I eroded. I tried following [these steps](https://www.nitrc.org…
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Hi all,
I believe this conditional allows the code to advance & the file names to be changed before run_first_all is complete.
**run_first_all** does the following:
(1) calls first_flirt
(2…
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Hello
I have a data set of gray matter mask. The output of LN2_LAYERS are all zeros. I attached the dataset here
[mp2rage_brain_GM.nii.gz](https://github.com/layerfMRI/LAYNII/files/6749195/mp2rage…
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Dear team,
I really enjoy your parcellation- thank you so much for this! As I would like to use it as ROIs for my tractography, I need to translate them to MNI space which is really hard using con…
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First of all: great tool! I really like the simplicity with which you can generate high quality visualisations.
Now to a small bug I might have found. I'm using the Destrieux atlas and would like …
loupl updated
3 years ago
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Hi Fieldtrip Team,
I am planning on implementing two atlases:
1. Melbourne Subcortical Atlas https://github.com/yetianmed/subcortex/tree/master/Group-Parcellation/3T
2. _(more experimental)_ H…