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### Description of the bug
I just found this forum entry, saying the reason why BQSR was dropped from the DRAGEN-GATK workflow was changes to Haplotypecaller and the addition of DragMap was not the r…
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Dear Development Team,
I could successfully run the demo with the HCC2218 dataset.
Unfortunately, when I run the workflow Germline-WGS with my own data (a non-model organism- diploid fungus), I …
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We have two overlapping deletions of size 22bp that we can identify with clear breakpoints on IGV. One is ~50% of the population, and the other is ~10%. However sniffles2 only detects the major vari…
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## ❓ Questions and Help
Dear immunarch team
Thank you for this friendly tool.
Now I want to analysis the SHM rate of my sequence. I have loaded the files analyzed by IMGT-High-V-QUEST.
but w…
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A user on the GATK Forum submitted a request to make the INFO field easier to manipulate through creating a table. At the GATK Office Hours meeting 11/8, we discussed the two ideas and favored the fir…
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Dear professors@tianshiliu,
Recently,I am very interested in your work for lineage tracing use this SClineager package.I use your test data in the data folder，which is the coverage.txt and the …
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Hello CL Team,
This recent and very interesting paper https://www.nature.com/articles/s41586-022-05547-7
reports 'Undifferentiated Spermatogonia' and we can consider this cell type as a spermatogo…
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- [ ] GC bias (see #15) (obs: reference genome!)
- [x] dups: in text
- [x] run_sarek/multiqc/multiqc_plots/png/mqc_fastp-insert-size-plot_1.png
- [x] run_sarek/multiqc/multiqc_plots/png/ -> mqc_mos…
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Dear Platypus team,
Thank you for developing this amazing package and the analyses available for TCR data are fabulous!
Can I ask a question about VDJ_call_MIXCR?
I got this error when runni…