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hi,
i ran the margin polishg progrecess (docker version) , and got a fail result.
root@ecs-9875:/media/datarun/blnanodata/data# tail marginPolish.log
/usr/bin/time -f '\nDEBUG_MAX_MEM:%M\nDEBUG_R…
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Hi, I got unknown error while running canu. I have attached the the error in the text file. Could you please give me the possible reason for it. Thanks in advance.
[CANU_error_2905209.txt](https://g…
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Hi Botond,
I was in a trouble when I tried to run sankefile like this:
`$ snakemake --use-conda -j 4 all`
**Error Report**:
```
Building DAG of jobs...
MissingInputException in line 23 of …
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Hello,
I am running Canu in a High Performance Computing cluster.
I used Canu for a bacterial genome assembly (draft) successfully.
I am trying to assemble another genome, but the job has failed…
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HI,
I got errors when running get_cns step, the errors are listed below.
The 'segmentation fault' also happened at sort_align stage, but disappeared when I rerun the wrong tasks. However, t…
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fasta: http://gannet.fish.washington.edu/Atumefaciens/20190102_metagenomics_geo_megahit/megahit_out/final.contigs.fa
then use coverage file
http://gannet.fish.washington.edu/Atumefaciens/20190102…
sr320 updated
5 years ago
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Hi everyone,
I am trying to get the ont-assembly-polish pipeline to run on our server (no docker allowed unfortunately) and when I issue the _$make all_ command I get the following error:
[tswue…
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I have a 7x WGS ONP genome and my jobs crashed after 64hours. Is this normal? I started with raw FASTQs and using default parameters except for the nanopore option.
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Hi,
Am I missing something or why in analysis.mk(line 45) it goes like:
@$(WDIR)/racon -t $(CORES) $(NANOPORE_READS) $(MINIMAP_OVERLAPS) $(CANU_CONTIGS) $(RACON_CONTIGS)
instead of
@$(WDI…
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Hey all,
I recently started using Nanopore sequencing and after the assembly steps I have a problem when running nanopolish.
First I assembled the genome using Canu. To do so, I used the basecal…