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Hello
please help me to solve this problem
I am not sure whether my small Ram is the reason behind this error or not
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## Environment
- [ ] Using a Docker container (include the `IMAGE I…
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Hello,
Thank you for publishing this great tool.
I am having trouble with extracting the downloaded Bacterial DB .xz file provided and getting this error:
"xz: (stdin): File format not recogni…
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Hi, I'm trying to sequencing the genome of a bacteria. I have the PacBio assembly that consists of one contig (I have another but it's for the plasmid); so, what I need is to circularize this sequence…
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Development of the student's project.
Task: setup the input of parameters for the bacterial movement.
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A signature of Prevotella copri and Faecalibacterium prausnitzii depletion, and a link with bacterial glutamate degradation in the Kenyan colorectal cancer patients – Sarah Obuya – J Gastrointest Onco…
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I have built Taxonomy from bash taxonomy.sh reference.fa
my reference sequence is around of size 372 GB
when the command is run
cargo run --release -- -s bacterial_alignment.sam -m bowtie2…
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Dear Chase,
I have a vcf file for snps of one strain against a ref. Can I use SNPgenie to calculate Pi trough the whole genome using sliding window?
Sincerely
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Thanks for developing Strainy!
I'm trying to use amplicon-based Nanopore reads to figure out strain abundances in bacterial samples. The pool has 740 strains and each sample may contain ~10 of them. …
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**Wrong taxonomy: Homonymous bacterial and ciliate genera conflated**
The bacterial genus Membranicola Li et al., 2016 (GBIF taxonID 9707714) is wrongly placed under Tintinnidae, a family of ciliates…
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Nice resource!
Any plans on giving it an update with AllTheBacteria ? (an additional 1,271,428 new assemblies)
[AllTheBacteria - all bacterial genomes assembled, available and searchable](https:/…