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Hello,
So, I used STAR to align some whole-genome sequences and for the alignment it seemed to work very well. However, when I use the resulting BAM files for coverage statistics with picard it tak…
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Although MACS2 uses AUTO mode by default, our bam files with PE reads from GSM3074495 (part of GSE11622) it handles in SE mode.
So results in `/mnt/stripe/bio/raw-data/geo-samples/GSE112622/chipseq…
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**Version info**
- bcbio version (bcbio_nextgen.py --version): 1.2.0
- OS name and version: ubuntu 16.04
**To Reproduce**
Run a umi workflow and view the gdc viral content statistics in multiq…
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Hi,
I'm using the following version of pysam and getting the error: `ref_info = aln_file.get_index_statistics(), AttributeError: 'pysam.libcalignmentfile.AlignmentFile' object has no attribute 'get…
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bash SequelQC.sh -u subreads.txt -n 16 -o Sequelresult1010 -v -k -p a
Running in NO_SCRAPS mode
Extracting data from .bam files
Data extraction was sucessful
Beginning calculation of read length…
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##My CPU version HiCPro reported an error：
```bash
Fri Jul 16 02:13:33 EDT 2021
Mapping statistics for R1 and R2 tags ...
Logs: logs/fat1/mapping_stats.log
Logs: logs/fat2/mapping_stats.log
Logs…
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Uns ist in der BAM-Instanz aufgefallen, dass es eine fehlerhafte Konfiguration des Statistics-Loggers gibt (Klasse `Opus_Statistic_LocalCounter`). Der Mechanismus basiert u.a. auf einer Datei mit dem …
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感谢您和团队开发这个给力的工具，我有一个问题一直解决不了
使用清华源镜像
BiocManager::install('exomePeak2')
library(exomePeak2)
set.seed(1)
GENE_ANNO_GTF = system.file("extdata", "example.gtf", package="exomePeak2")
…
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- Can a `DataObject` that is the output of any process use any `FileTypeEnum` in it's `data_object_type` slot?
- do the different permissible values come from different axes of differentiation?
- sh…
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Dymas, 4bonacci experiment:
```
Error in job 99 while creating output file 3_evaluation.dyn/et/00000.et.gz.
RuleException:
UnboundLocalError in line 122 of /Users/karel/anaconda/envs/py34/lib/python3…