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Hello, I am trying to run the program and am coming across this error. Do you have any advice?
$ variant Sorted20130SAMy43Aligned.bam --motif Telomotifs.txt -b -o TelofromSorted.bam
...making the …
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The sequencers *do* allow a sample sheet to specify the same name for multiple samples, and currently this results in all but the first sample of a given name being "lost" during processing. How shou…
ressy updated
4 years ago
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Hey,
I'm trying to run megaqc on outputs of bcl2fastq module, and getting an error:
```
megaqc upload multiqc_data.json
This is MegaQC v0.1.dev1
/Users/vsaveliev/miniconda3/envs/multiqc/l…
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## Feature request
### Tool(s) involved
ExtractIlluminaBarcodes and IlluminaBasecallsToSam
### Description
Currently we use the barcodes file from `ExtractIlluminaBarcodes` to get the most pre…
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Dear authors,
Please provide information needed to execute your pipeline:
1) what is the format of the samplesheet
2) how can one know barcodes before running any analysis?
3) What is BARCODE_STAR…
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Current sequence file name:
23XXX_M065782023-XX-XXX-XXX_S1_R1_001.fastq.gz
Correct sequence file name:
23XXX_M06578.2023-XX-XXX-XXX_S1_R1_001.fastq.gz
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## Bug Report
### Affected tool(s)
IlluminaBasecallsToSam (possibly ExtractIlluminaBarcodes)
### Affected version(s)
Version:2.26.3
### Description
I am using ExtractIlluminaBarcodes and …
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Hi,
I've been trying to run vireo (v0.5.8) for some snRNAseq data, but I've been getting the following error:
Loading vireoSNP/0.5.8
Loading requirement: bcl2fastq/2.19.1
[vireo] Loading cel…
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### Have you checked the docs?
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules)
### …