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Dear SingleR community,
I've recently installed SingleR for annotation of various T-cell subtypes. Although I was able to install via the bioconductor command
`BiocManager::install("SingleR")`
…
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Hi,
I used RunDEtest before and it worked just fine. Now that I'm using the latest SCP version (SCP 0.5.4) because of the velocity genes error, this doesn't work anymore (not running, still 0% afte…
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Hello,
I am currently running a parallel jobs (with bplapply) on an LSF cluster using BatchToolsParam and I found an issue where there are no logs produced in runs that have a few jobs failing.
…
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Suppose I want to use SharedObject with BiocParallel, e.g.:
```
library(BiocParallel)
library(SharedObject)
library(assertthat)
## Where will these workers run?
register(BatchtoolsParam())
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Hi,when I was ready to simulate the pseudo bulk samples using 'custom' scenario, it reported an error.
###
Error: BiocParallel errors
1 remote errors, element index: 1
1 unevaluated and other er…
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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
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Warning in RunGSEA(srt = scData.OST.l[[i]], group_by = paste0("Standardpca_SNN_res.", :
All values in the geneScore are greater than zero. Set scoreType = 'pos'.
Species: Homo_sapiens
Loading ca…
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Hi,
I've trying to work on this for days and hope ppl here can provide me some solution. Currently, I set 6 knots and I have 7 lineages.
My codes are:
`Slingshot
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Hi, I am trying to generate quality plot, when I type:
plotQualityProfile(cutFs[1])
Error: BiocParallel errors
1 remote errors, element index: 1
0 unevaluated and other errors
first remote…
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Hi, sir or madam
bp