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I wanted to put the following on a slide in the demo deck, but I realize that it's falling short because it doesn't associate labels with features.
https://lamin.ai/laminlabs/cellxgene/artifact/Ntd…
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Hi! I met a problem when I tried to import a dataset from a collection.
Normally, when the dataset is not from a collection, I can get the dataset using these codes:
`curated_seurat_object
dplyr…
YXC33 updated
1 month ago
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## Describe the bug
I am just going through the R [vignettes](https://chanzuckerberg.github.io/cellxgene-census/r/articles/census_access_maintained_embeddings.html) for using census embeddings, and…
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Incredible work on this project!
I would like to kindly request the addition of a "normal" record to the `bt.Disease` .
Currently, this specific record appears to be missing, which could lead to …
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Please review the current schema requirements for [`development_stage_ontology_term_id`](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/5.2.0/schema.md#development_stage_ontol…
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As we migrate to more C++ shared code in tiledbsoma, the error handling is changing and could use some UX refinement to make error messages easier to understand.
Example: I used a value filter o…
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Released 2024-06-16. Also note we do support Python 3.8 through 3.11, while NumPy 2.0 will not support Python 3.8.
Per https://github.com/numpy/numpy/releases/tag/v2.0.0:
> The Python versions s…
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## Describe the bug
When executing `from cellxgene_census.experimental.pp import highly_variable_genes` on 3898 cells, across 60K genes, it takes 38 seconds, and I am not sure if this is expected. …
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# Context
There are emerging requirements for reusing the `cellxgene-schema CLI`schema+validator for scenarios that are more **relaxed** than CELLxGENE Discover's current requirements.
# Relaxat…
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Hi,
I would like to deploy the cellxgene VIP result with Heroku
and would like to know how to modify the "Dockerfile" provided by cellxgene
Here is my modified version and I'm getting this …