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Xiaotao,
I am using neoloop to produce some neo-loops and neo-tads (some rows with the last columns as "1"). But I am interested in validate whether they are really neo-loops/ neo-tads that are r…
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| Name | Department/Program | Experties/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Annie Cavalla | Bioinformatics | Cancer genomics, single cell tra…
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~~Please submit your assignment for week 8.~~
**`README.md` file with commands and answers to questions**
**4.5/5**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
|…
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https://doi.org/10.1109/BIBM.2016.7822593
> Enhancers are crucial to the understanding of mechanisms underlying gene transcriptional regulation. Although having been successfully applied in such pr…
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[Steps in data analysis](http://barc.wi.mit.edu/education/hot_topics/ChIPseq_2016/AnalysisofChIP-seqData2016.pdf)
0. **Preprocessing**:
i) Bad quality -> Tool: Use “FASTQ Quality Filter” and/or …
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Hi， I'm runing the eNet for my own data, but the GPTab is NULL and without any error message:
Bellow is my code:
```
cre.mat
jphe updated
12 months ago
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Dear Team,
I wanted to express my deepest appreciation for creating such remarkable tools for predicting promoter-enhancer interactions. They have proven to be tremendously helpful!
I have a qui…
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Could it be possible to support more genomic regions by plotPeakProf2?
Now the **by** parameter of **plotPeakProf2** is only support **one** of 'gene', 'transcript', 'exon', 'intron' , '3UTR' , '5U…
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Thank you for providing very useful software.
I wonder if this software is suitable for bulk tissue ATAC-seq and RNA-seq.
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Hello, thank you for your convenient tools. I want to only focus on TFs regulating a exact set of genes and construct regulatory network on it. How can I do it? Is it right to use gene sets tpms expre…