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Hi There,
The following command was suggested for hic scaffolding, but the help of program says that -c is the candidate number. Can you please clarify what is the $ref. I would be appreciated if yo…
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Before, I only used the hifi data to run hifiasm and there were results, but recently I added the hic results to assemble, but no results were displayed. Looking at the log file does not report an err…
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This is a small project to make the anvi'o interactive interface able to give the user the opportunity to work with Hi-C data (more information on this technology is [here](https://en.wikipedia.org/wi…
meren updated
5 years ago
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Hi,
I've been trying to use chromap for Hi-C data. It is very convenient and super fast!
I have no problem for most Hi-C dataset, however I encountered an "bad_alloc" issue for ultra-deep Hi-C.…
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Hi
I tried to scaffold my contig level genome with my hic data but failed with the segmentation fault error.
I think this error can be occurred due to the large hic alignment, which is about 700Gb…
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HELLO.
my out.JBAT.log file generated is empty.
(java -jar -Xmx32G juicer_tools.1.9.9_jcuda.0.8.jar pre out_JBAT.txt out_JBAT.hic.part
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Hi @nvictus
As quickly discussed, I tried to build a cooler object on a 3Mb Hi-C region from capture Hi-C data.
I'm facing several issues according to the test I run ...
I have a bed file with g…
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Hi, thank you for the powerful script.
Now, I have the haplotype-resolved contig-level assemblies, but I don't have the child Hi-C. I have only the Hi-C data of this sample. Can I use this script to …
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Hey Nicholas,
Wonderful pipeline -- I appreciate the added NextFlow implementation.
I had a request/recommendation that may improve compatibility with promoter-capture Hi-C users: a utility scr…
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As a example:
* a/a.h
```cpp
#include "b.h"
```
* a/c.h
```cpp
hi_c c;
```
* b/b.h
```cpp
#include "c.h"
```
* c/c.h
```cpp
hello_c c;
```
* test.cpp
```cpp
#inc…