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Hi authors,
Congratulations for the article and nice work. How did you create/process the raw Hi-C files to create annotate files. It would be really helpful to include the data pre/post process scri…
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Hi,
Thanks for you nice hifiasm!
I have assembled two haplotypes using HiFi and Hi-C reads. Now I will scaffolded the two haplotypes using Hi-C data. Do I need to divide the raw Hi-C reads to two ha…
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Xiaotao,
This looks like an amazing tool and I would love to give a shot on our newer Hi-C protocol that uses DdeI and DpnII.
I know your code can work with Arima, so is there something you or I can…
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1. add n/kdsnj c/sdkjn p/123 e/test@gmail.com a/kdsm t/hi t/hi adds a client with one tag only
2. add n/kdsnj c/sdkjn p/123 e/test@gmail.com a/kdsm t/hi t/Hi adds a client with 2 tags
I think it woul…
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hello, I get two results of the Hi-C integrated assembly :
hic.hap1.p_ctg.gfa and hic.hap2.p_ctg.gfa
hic.hap1.p_ctg.gfa :354 contigs, N50 28114168bp, N75 28114168bp
hic.hap2.p_ctg.gfa :180 …
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The 45 degree angle rotation could be a position function. Could add options such as `clip = c("lower", "upper", "neither")` or `sawtooth = FALSE`. Should convert raster-like data to polygon style par…
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Hi, kaistcbfg
I'm new for inter-chromosomal interactions analysis and I'm trying to normalize a Micro-C data using HiCAN.
my question is that after generate pairs file using pairtools and remove all…
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Hi There,
The following command was suggested for hic scaffolding, but the help of program says that -c is the candidate number. Can you please clarify what is the $ref. I would be appreciated if yo…
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Hi. I find some question about the count of mutation in SBS6.: Ref CG to C will be counted to C>G in SBS96 and also be counted in ID.
Is this normal? I think it should be only counted in ID.
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This is a small project to make the anvi'o interactive interface able to give the user the opportunity to work with Hi-C data (more information on this technology is [here](https://en.wikipedia.org/wi…
meren updated
5 years ago