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**Which tool should be included?**
https://github.com/marbl/verkko
https://www.biorxiv.org/content/10.1101/2022.06.24.497523v1
**How is it used?**
```bash
verkko -d --hifi [--nano ]
```…
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Hi,
I am working with HIFI+HiC haplotype resolved assembly with HIFIasm (both have been also scaffolded with HiC data). Based on BUSCO and Merqury results, assemblies contain ~%3-4 duplication. I w…
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Thank you for the nice and very efficient assembler.
I assembled a highly heterozygous genome and hifiasm did very well separating primary and haplotigs (p_ctg size is only a bit larger than the ex…
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### Description of feature
Offer option of running Merqury and Meryl as an alternative to Merqury.FK? These were used by both CBP and Nor-BP
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Hi,
I am using meryl pipelined with merqury via the script eval/qv.sh which repeatedly put .meryl files as input files but I am constantly getting this error:
Can't interpret '*.0.meryl': not a me…
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Hello,
Do you have an officially supported Docker container image (or a bioconda package) for MerquryFK?
The ticket is similar to the https://github.com/thegenemyers/GENESCOPE.FK/issues/1 .
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Hi Mike,
Hope all is well with you
I'm revisiting our GenomeScope analyses with cleaner reads and was curious about a trend I see in many papers. As well as looking at other k-mer based assembly ev…
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Hi, I estimated the genome size with HiFi data, the estimated genome size is 328Mb with 1.02% hetorozygosity:
![plot](https://github.com/chhylp123/hifiasm/assets/61004157/2387e38c-6636-4ce0-bdab-ce56…
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Hej,
The commit (aa6ab40b628e9ddc7a492099533c83f628ffb719) results in following error:
`sh: 1: cannot create /dev/NULL: Permission denied`
Changing **/dev/NULL** to **/dev/null** solves it.
…
iggyB updated
2 years ago
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Good morning!
I would like to ask if you can provide a more explicit explanation about what "wtpoa-cns" does.
I've been looking around in literature and internet and a I've only been able to find …