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hi
I noticed a strange behavior of MaSurCa for hybrid assembly. I have 10 samples (they are all different for sure), each sequenced using both Illumina and MinION and i made hybrid assembly using M…
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This is the comment thread for [计算序列的N50、N90等]( https://galaxysd.github.io/bioinformatics/20120326/cal-n50-n90).
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This is the comment thread for [计算序列的N50、N90等]( …
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Dear voutcn,
I have problem with my result for using MEGAHIT. My result for N50 is very short, around 450-550bp. My sample is from soil plantation. I have reed the same issue from this page and you…
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Hi @arangrhie
Thank you and the team for great QC tool. I have two questions:
1) I have parental data from HiFi and MGI platform. I used HiFi parental data and MGI for assessment. HiFi based phasin…
LGG02 updated
1 month ago
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If we are using docker container which created by following command line, it will only use numa node 1.
```shell
docker run --privileged --cpuset-cpus=40-79 --cpuset-mems=1 docker_image_name
```
…
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Hi,
We used ont ultra-long hap reads from triocanu to assemble the hap genome. we found an unusual N50 and genome size by using ver2.5.0.
The genome size was less than our expected about 100Mb an…
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For three different assemblies, the output from YAHS is exactly the same as the input assembly. I used the Arima-HiC Mapping Pipeline to map my HiC reads to my assemblies. Assemblies are either HiFi-o…
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Det er flere kriterier som er viktige for valg av kilde:
- Det må inneholde verdier/egenskaper vi skal levere ( minus motorveg ).
- De må inneholde gode hierarkiegenskaper
- Uten geometrifeil
- Det må…
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Hi all
We have a genome size about 600 Mb with high heterozygosity about 3%,and we have 42 Gb,N50 11 Kb pacbio data.
I got this genome size 1.36 Gb,N50 60 Kb a very bad result with falcon,b…
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1. The N50 and L50 for both assemblies and state what these values mean:
a. N50 -
Canu = 4631892
Spades = 133353
b. L50 -
Canu = 1
Spades = 13
- N50 is the length for which the set of all …