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Hello,
Thanks for developing and maintaining great tools!
I've attempted to generate fastq files for the below runs using fasterq-dump, but unfortunately, it didn't work. I received an error cod…
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Would you recommend using CANU-corrected minion reads as suggested in this publication? https://pubmed.ncbi.nlm.nih.gov/32419382/
Is HLA-LA capable of producing good results from raw minion reads?
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Hi there, this looks like a really cool piece of software and it is doing a lot of the things we have thinking about needing to get to do real-time AMR detection from ONT runs. I was wondering if you …
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Hi
With a recent update nanopore is now producing a new format. Is this also accepted at the ENA? (https://ena-docs.readthedocs.io/en/latest/submit/fileprep/reads.html#oxford-nanopore)
Best reg…
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### Description of feature
https://www.biorxiv.org/content/10.1101/2022.01.31.478527v1
FYI the preprint that @Midnighter linked used PacBio's snakemake workflow for HiFi/nanopore reads with MEGA…
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Hello, I'm running the following command in my terminal:
**fastp -i user/nanopore/inputs/ -o user/nanopore/outputs/ -A -G --qualified_quality_phred 10 --reads_to_process 5000 --thread 8**
Althou…
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could i use it to analyse my nanopore data?thanks !
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### Problem Description
We are currently decontaminating the short reads using `bbduk.sh`. Would it make sense to decontaminate the long reads as well?
### Problem Solution
I've seen certain …
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When I run nlms_compress.py with the following command:
`python nlms_compress.py -m c -i ../data/evaluation_datasets/dna/nanopore_test.npy -o nanopore_test_compressed.bsc -a 0.01`
I encounter the …
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Any reason why cuteSV report parameters for SV calling are not used?
cuteSV recommends following parameters according to their gitub page.
> For ONT data:
--max_cluster_bias_INS 100
--diff_rati…