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- [x] Integrate 3D Module with LHU-Net
- [x] Run on Synapse
- [x] Run on Panceras
- [x] Run on LA
- [x] Run on ACDC (Optional)
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Hi Nanostring team,
Will the reference matrices be updated with more genes based on experiments from the 6,000 plex assay? If this is in development, would the 6,000-plex assay matrices allow for t…
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Hello there,
I encountered an error while running PAGA analysis:
######PAGA analysis#######
pancreas_sub
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Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets
https://doi.org/10.1186/s13059-020-02006-2
Data: https://www.ncbi.nlm.nih.…
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## Description
Currently, to develop Views without Previews a developer should rebuild on every change. To improve the overall developer experience we should add previews to all `View` files.
## P…
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Good job,when I run the tutorial the url `http://zhanglab.net/scalex-tutorial/pbmc.h5ad` ,`http://zhanglab.net/scalex-tutorial/pancreas.h5ad` and `http://zhanglab.net/scalex-tutorial/pancreas_query…
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Epic of all bionetworks' Tier 2 definitions
Tier 2: [folder](https://drive.google.com/drive/folders/1zKyhGugIw0BCGTaITF2wMGajqpI4VxeR), [cross bionetwork summary spreadsheet](https://docs.google.co…
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### What
Add estimates of rare nutrients (using CIQUAL or other custom tables) for people with rare illnesses
- An example is the lysine levels in food, for an illness touching the child of a friend…
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Hi, thanks for the great package! I am trying to run trajectory inference with the PAGA wrapper and a seurat object as described in the vignette.
when I run with my object, I get the error:
> fina…
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Hi
I am trying to use SingleR for annotating my clusters. I would use "Pancreas" datasets but I get this error:
"> query(eh, "BaronPancreasData('human')")
ExperimentHub with 0 records
snapshotD…