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In todays call we decided tentatively to add bird phenotypes directly to uPheno.
I was also recommended to check out these resources and possibly reach out to @caripark who has some experience deal…
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PMID:12966087 epistasis with Rhp51
PMID:12966087 epistasis with Rhp51
PMID:11027263 same as hsk1-1312 alone
PMID:20799962 same as rid1-1 alone
PMID:20799962 same as rid2-1 alone
PMID:31833215 sam…
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Hi Team,
Appreciate if someone can advise me on this issue:
**Previous steps:**
1. SNP and COG association with fixed effects model
**Pyseer having issue:** K-mer association with mixed effec…
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(I need to find instructions!)
https://pombase.github.io/canto_tutorial/phenotypes/genes_alleles_genotypes.md
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Currently we have some phenotypes (such as Alzheimer's) under phenotypes, but other phenotypes are in their own separate category (such as PD or stroke). We may want to make that consistent.
We als…
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When reviewing variants, it is important to be able to evaluate the role of the variant, but also how well the gene matches to the entered phenotypes. I imagine 2 things to do:
1. In the variant re…
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Or maybe call it "Variant", since it will be a variant-centric view? To be defined.
It would make a standard PheWAS plot, aggregating the p-values of a particular variant across all phenotypes.
We…
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Fix the ones which don't sporulate (at all) which might _not_ be required for vegetative growth. I thought there was a ticket for this, but I can't locate it.
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NOTE: A description of adding a module through Composer is available in Installation. This is an alternative, a manual installation.
Manually downloading Tripal Cultivate Phenotypes Module.
Go t…
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Hi, I am trying to run GEM analysis, but it keeps showing an error about phenotype file. I have attached my code here. Do you know what is my problem here?
singularity exec \
> -B /humgen/ManningL…
lc491 updated
2 months ago