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In todays call we decided tentatively to add bird phenotypes directly to uPheno.
I was also recommended to check out these resources and possibly reach out to @caripark who has some experience deal…
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Hi Doug,
I'm currently using LDAK (Version 6) for my analysis, and I've encountered an error that I'm struggling to resolve. Here are the details of the issue:
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In this pop up, I expected to be able to select multiple phenotypes, but the annotation is created as soon as I select one
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Description:
Create a Flask web application to provide a user-friendly interface for interacting with the PanelApp data stored in the database. The interface should allow users to visualise and query…
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Currently we have some phenotypes (such as Alzheimer's) under phenotypes, but other phenotypes are in their own separate category (such as PD or stroke). We may want to make that consistent.
We als…
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Hello, I visited the Monarch website for gene AP1G1 https://monarchinitiative.org/gene/HGNC:555#phenotype and I see only some EFO phenotypes being reported.
I would assume to find HPO phenotypes re…
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When reviewing variants, it is important to be able to evaluate the role of the variant, but also how well the gene matches to the entered phenotypes. I imagine 2 things to do:
1. In the variant re…
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Some DHPS/DHFR joint phenotypes confer S-P/IPTp resistance. Ability to analyse phenotypes across genes jointly would be valuable here, though if there is just this one usecase, it may be easier to jus…
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check these annotations.
https://www.pombase.org/reference/PMID:32355220
https://www.pombase.org/reference/PMID:34292936
I'm not sure that the isochore formation is decreased compared to wt, i…
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This causes thensorqtl to fail. I have 4 phenotypes, all 4 are dropped as there are no variants in the region that are passing the thresholds predefined. As all of thme are dropped there is nothing le…