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### Project short name:
CellInteractionsHNSCC
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1…
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Hi, I have some unpaired scRNA-seq and scATAC-seq data, they are sequencing the same samples, but in separate scRNA-seq and scATAC-seq assays, so the cell barcodes are different in these datasets. How…
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Carried over from #958
- [398e34a9-8736-4b27-a9a7-31a47a67f446](https://cellxgene.cziscience.com/collections/398e34a9-8736-4b27-a9a7-31a47a67f446)
- `kit` should be used to update `EFO:0008913`…
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- [x] Remove all donwstream analyses e.g., DeSeq & PCA
- [x] change script [[count-matrix.py](http://count-matrix.py/)](http://count-matrix.py/) line 40 sep="\t" to sep = ","
- [x] switch to one s…
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Hi,
I am hoping to perform transcriptome assembly using both nanopore long read sequencing data and illumina short read sequencing data. It appears RATTLE only permits the use of long read sequenci…
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Hello
I'm trying to add some clinical data to each of 75 individual samples (.obs) from bulk RNA sequencing. However, each individual sample can have 3-5 visits (treatments, etc) and I can't quite …
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Hi, I'm trying to perform a m6a (on RNA) detection using tombo (and some other softwares).
I'm having trouble performing the resquiggle, I've read many of the other opened issues and I can't find a …
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For the following s/blow5 header made with blue-crab (0.1.2) , it does not seem that slow5tools degrade (1.3.0) recognizes the ULK kit.
```bash
#slow5_version 0.2.0
#num_read_groups 1
@a…
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For new term requests, please provide the following information:
## Preferred term label
PIPseq
Asteria scRNA-seq
HIVE CLX
## Textual definition
PIPseq: The Fluent BioSciences PIPseq…
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Hello,
I'm analysing single-cell full-length RNA sequencing data. I would like to perform an analysis on alternative splicing exons, which has been mentioned multiple times in your research group's…
weib3 updated
4 months ago