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Hi, I intend to convert a h5ad file to seurat data. The code is:
library(anndataR)
adata
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**Is your feature request related to a problem? Please describe.**
In the contributing guide, there is currently no section on benchmarking or optimizing code.
**Describe the solution you'd like**
T…
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I think it would be good to have consistent styling of the word scverse, ideally in a way that is easy to write in markdown documents.
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
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As per the title, I just ran into a case where `datashader` was chosen as the method for `render_points`, which led to my points being plotted without the relevant transformation being applied. I stol…
clwgg updated
2 weeks ago
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CC @giovp @LLehner
The 10x team reviewed the Xenium notebook and found it very useful! (Btw, it's ready to merge https://github.com/scverse/squidpy_notebooks/pull/125).
They suggested to consid…
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### Please make sure these conditions are met
- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
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For using ISS data one needs to know the "round" and "channel" for each image.
Is it within scope to represent this metadata in SpatialData?
I could not see anything about this here: https://git…
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## Please use the template below to post a question to https://discourse.scverse.org/c/ecosytem/cell2location/.
### Problem
the use_gpu parameters cannot be used in NB regression model traini…
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Hello Quentin,
I have this problem that I posted in spatialdata github as an issue but we are wondering if it is not related to sopa:
Here is the issue:
https://github.com/scverse/spatialdata-i…