-
- https://github.com/broadinstitute/gtex-pipeline/tree/master/rnaseq
-
``` python
def __getitem__(self, index):
s_begin = index
s_end = s_begin + self.seq_len
r_begin = s_end - self.label_len
r_end = r_begin + self.label_le…
-
Hi authors,
Thanks for your interesting work.
I have some issues. Your paper cites the TimesNet paper results as a direct comparison but your setting is inconsistent with the setting of TimesNe…
-
LB.1+C2788T+A22107T(S:K182I)
GISAID query: C2788T,A22107T,G22111T
No. of seqs: 12(UK 10, USA 1 Canada 1)
First: EPI_ISL_19157285, UK, 2024-5-1
Latest: EPI_ISL_19261282, UK, 2024-6-29
[usher…
-
Thank you for sharing this resource. Although many of the scripts for processing snRNA-seq data are available, where can we find scripts for snATAC-seq data? Or, what would be the best way to use snAT…
-
I'm wondering if there is concise documentation somewhere for reproducing the exact analysis of the TCGA/GTEX data in this [paper](https://www.nature.com/articles/nbt.3772) (but with new samples).
h…
-
## Preferred term label
modified STRT-seq
## Synonyms
3' STRT-seq
## Textual definition
A modified version of STRT-seq developed by Fuchou Tang's lab as described in PMID: 28457750, whi…
-
JN.1.18.7+T3055C, C17518T, G21800T, C22082T, G23628A(Orf1b:L1351F, S:D80Y,P174S,S689N)
It is not a single cluster as there exist seqs from both England and Wales.
GISAID query: G21800T, C22082T, …
-
Consistent and transparent AIRR preprocessing pipelines. AIRR data is processed from FASTQ to FASTA reads in a way that is consistent between repositories and between studies with similar protocols. T…
-
Currently OpenMP doesn't support the OpenACC `loop seq` construct and no direct translation is present/possible.
A possible translation could be to use the `bind(thread)` construct instead. According…