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1. Add a new enum for seqr data type,
2. Then, es-index typed analysis will also include a "seqr-data-type" attribute on the meta (as well as a `sequencing-type`)
Clarifying that:
* Seqr projects…
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Hi,
I am using `caveman.pl` with Whole Exome sequencing (WXS) data however the execution ends in an error in the `mstep` process (please see the error below), this error occurs for various regions …
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**Submitting author:** @jinfinance (Rong Jin)
**Repository:** https://github.com/ncezid-biome/HMAS-QC-Pipeline2
**Branch with paper.md** (empty if default branch): main
**Version:** v1.2.0
**Editor:**…
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### Description of feature
## Idea
454 sequencing is probably not as much used for amplicon sequencing as Illumina MiSeq nowadays, but it was popular some time ago and is still used. It would be g…
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Hi, I am trying to align 16S/ITS read from nanopore sequencing against 16S/ITS reference. bwa-mem2 (v2.0pre2) do well in building index. But it fails in the alignment step.
bwa-mem2 version: 2.0pre2…
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Problem: We'd like to replace the system of emailed spreadsheets with a DataHarmonizer tab to ingest data. The suggestion is to prototype this with sequencing data since we've done this manually for 1…
aclum updated
3 months ago
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Hello!
First of all, thank you for sharing IsoLamp with us.
I see that IsoLamp was created for the targeted sequencing, but I have a small newbie question. I was wondering if it would be possibl…
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**Describe the bug**
Dear bamtocov team,
I have human WES data and am trying to run bamtocov. After 6 hours, not even half is done/calculated, even when using 24 threads. Maybe I am missing somet…
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