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Hi,
Wonderful job!
I have searched through many articles and am looking for a Shiny app that can handle spatial transcriptomics data in a similar manner to how Shinycell handles single-cell transc…
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So I successfully created a singler object from the combined/integrated Seurat object but I can't convert it to upload and visualize it in the SinglerR website. I get this effort message;
`Error …
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Hello,
I wanted to generate shinycell objects from my seurat object, but the function is unable to find the data slot in the gex.slot = "data" input, maybe because seurat v5 does not store counts, …
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Thanks for your great work and recent update of seurat-wrappers.
I followed the vignette of liger to test the new function `RunQuantileNorm`
```
library(liger)
library(Seurat)
library(SeuratDa…
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I'm hoping someone might point me in the right direction. When I try and merge the two Seurat objects below, I get a subscript out of bounds error. I'm not sure if the incompatibility is a bug, or an …
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**User story**
I looked at this [documentation](https://vitessce.github.io/vitessceR/articles/web_only/json_remote.html), but I don't know if there's any easy way to convert my seurat objects into th…
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hi, this is a great paper and awesome CellTypist models, thanks for this!
I'm seeking for metadata that actually describes the Seurat objects you provide with the supplementary - in all the objects…
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Hi MILO Lab,
Thanks _so_ much for a wonderful tool. I'm hoping to use the Spatial Trajectory screen on a Visium V2 dataset (pre-processed with Seurat and converted to a SPATA2 object using the asS…
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I tried to sctransform a BPCells matrix based seurat obj, but since it contains more than 2^31-1 non zero values, it failed. So i split the BPCell matrix based seurat object, and then run sctransform …
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Like we discussed, one way is having a file format conversion module. Related to this, here are some scripts that solve this issue:
Convert `Loom` `Seurat`:
- https://github.com/satijalab/seurat/…