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Hi immunarch team
I have 10x TCR and BCR sequencing + 5' GEX
I have several samples
For one sample I know I should do like this
```
> setwd("/Users/angel/Downloads/p1_sample_feature_bc…
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Hi, I am new to tcrdist. When I want to compute the distance between two sets using "compute_rect_distances", it always gives me the KeyError: 'pmhc_a_aa'. Does anyone know how to fix it? Thanks
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Hello,
I have scRNA + AbSeq + TCR sequencing data from BD rhapsody. The output from SevenBridges is different to the one from CellRanger. Platypus looks very promising and would like to follow you…
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**CL term**
alpha-beta T cell, CL:0000789
**Synonym to be added** (include synonym scope broad/exact/narrow/related and reference(s))
conventional T cell, Tconv
needed for INCLUDE
cc @lopierr…
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Hello and thanks for **turboGliph**! Here are a couple of issues that I have noted and am trying to understand. I use the included package dataset for reproducibility.
```
library(turboGliph)
uti…
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Hello Sebastian and co.
Thanks a lot for designing this nice package to understand the nature of TCR repertoire and potential expansions. My goal with the current airr data I have is to compare dif…
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[Voogd L et al. Mtb HLA-E-tetramer-sorted CD8+ T cells have a diverse TCR repertoire. iScience 2024](https://pubmed.ncbi.nlm.nih.gov/38439958/)
VDJ sequences of Mtb peptide specific CD8+ TCRs recog…
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Hi,
First of all, This project is really amazing! It's been incredibly helpful for me.
I have a small request: could you please provide the full datasets used for training and testing each model…
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**Describe the bug**
IEDB database provides cdr3_aa sequences instead of junction_aa sequences. scirpy database import code puts this in the slot for junction_aa. The sequence would then be missing t…
racng updated
5 months ago
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[Lossius A, Johansen JN, Vartdal F, Robins H, Jūratė Šaltytė B, Holmøy T, Olweus J. High-throughput sequencing of TCR repertoires in multiple sclerosis reveals intrathecal enrichment of EBV-reactive C…