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Hello,
I am running the pipeline, but it gets stuck with this message printed on the CLI (only the last lines):
```
web_1 | 2020-02-03T10:26:48.843Z dna:service:qualityControl Script finished …
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I installed mitoz v3.6 using conda. The test run was ok. I wanted to generate mitogenome from a SE data. Below is my command,
```
mitoz all --outprefix PhoSp1_trimmed --clade Arthropoda --genetic_…
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Hi,
I ran STAR using this command:
STAR --runThreadN 12 \
--genomeDir
ref_genome.fa.star.idx \
--readFilesIn R1_val_1.fq.gz R2_val_2.fq.gz \
--outReadsUnmapped None \
--twopassMode Basic \…
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read_qc.sh: line 124: trim_galore: command not found
mv: cannot stat 'READ_QC_kamal/ERR011347/ERR011347_1_val_1.fq': No such file or directory
mv: cannot stat 'READ_QC_kamal/ERR011347/ERR011347_2_va…
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Hi, I found the adapter related options are confusing and give surprising result as show below. In a word: More adapter information may miss rescue some reads! By the way, fastp v0.21.0 is used.
…
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I'm running fabfos on one of my samples
python ~/src/FabFos-master/src/FabFos.py -r BifidoMiSeq.S09/fwd -2 BifidoMiSeq.S09/rev -m BifidoMiSeq.S09_miffed.csv -b backbone.fasta -p pe -t F --force -f…
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# Bin removal and evaluation
## Assembly
The bins that are to be removed are to be concatenated and then used as a reference genome.
1. Concatenate the bins to a separate .fa file.
- `cat fa…
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Hi
I am following the example steps provided under Testing section on chm13 genome. cresil trim was successfully run. When I run crisel identify, the following error comes.
![image](https://user-i…
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I use Ubuntu 16.04 on a server, use fastp v0.20.1 to do QC, but I find that I get different clean read data files. For example, today 10:00 am I run fastp for raw sequencing data, I get clean fastq fi…
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**Are you using the latest release?**
Yes
**Describe the bug**
I have switched to mysql from sqlite because sqlite takes so long to run. Train keeps failing at the PASA step, due to an inability …