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Thank you Greg for this awesome contribution, I am finding it quite useful for my application.
I plan to generate a very large hashmap with bitsets as the key and integers as the value. The size o…
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Hi Mikhail,
I am trying to assemble a mammalian genome (~2.4g of haploid size). We have around ~33X of Pacbio Sequel data with a subread N50 of 10.3 kb. I have been wanting to run Flye on the …
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Hello, developers.
I would like to use your tool, but there is an error. I simulated 45X human genome by pirs:
```
/software/bin/pirs simulate -l 150 -m 350 -x 45 -s /software/install/pirs_simpl…
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Hi, did anyone have this issue before? How can I fix this?
> sortmerna --ref /gpfs1/homes/s4/bin/silva-euk-18s-id95.fasta,/gpfs1/homes/s4/bin/index/silva-euk-18s-db:/gpfs1/homes/s4/bin/silva-euk-2…
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Currently I use the following to ensure the binaries have been compiled with the same kmer max settings:
#!/bin/bash
#use strings to look in executable for kmer maximum setting for the files on comm…
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Hello,
I'm writing a workflow to compare all samples from an S3 bucket, where multiple runs of the same sample are separated by semicolons, and samples are separated by pipes. There's some issue with…
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We need to test nancompore with artificial data.
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Dear Iqbal lab,
I have sequences from an MTB isolate which is a known 50:50 mixture between two different strains, one of which is RIF resistant due to the H455Y mutation in the rpoB gene. In the J…
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Hi,
Tried to run the tool using the run_novoBreak.sh script and got the following error at the end of the log file, any ideas?:
1433560 kmers passed the minimum frequency cutoff in tumor (3) and…