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I often find that importing large files at the beginning of my workflow to be a large time bottleneck. For instance, if I want to map a pair of fastq files from the EBI FTP site, it can take several …
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Not so much of an issue as a query. I'm interested in using the tiled multiplex PCR approach for enriching targetted regions of larger genomes (e.g. bacterial) from mixed samples. I'm thinking about p…
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Just throwing ideas out here, but I wanted to at least write them down and maybe other people would have useful comments.
Now that we're putting increasingly large numbers of genomes in Apollo, data …
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Hello,
Will the databases of HMMs ( cellular organisms and GVOG) be updated?
If I want to build my own database, how to configure it to be compatible with viralrecall?
How can I skip the prodigal…
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**Lightning talk:** "phASE-Stitcher: A tool for phasing genome wide haplotype in F1 hybrids using Phase Informative Reads"
**Authors:** Bishwa K. Giri, Dr. David L. Remington
**Abstract:**
Next …
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Hi, @lrauschning
I tried `msyd` with 279 A.thaliana genomes, but the core synteny region is small. For example, Chr1 only has several regions beginning only in the Chr1:1-200000 and Chr1:2700000-3…
baozg updated
3 months ago
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I'm trying to use this program on a large set of divergent Streptomyces genomes, and the program seems to run without any errors, but the resulting fasta file is empty and it says in the outfile that …
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Hi:
I am studying a non-model diploid mammal species with a large genome size (~6GB). I have 30X Hifi data, as well as Hi-C data from Dovetail Genomics using their Chicago libraries. I have made an a…
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Hi there,
I am confused on the result of genomescope2, hoping that you may give an answer to it. Thanks!
This is a HiFi sequencing data on a nematode, former research indicated that it has a rep…
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This is just to drop the idea. Tools like maker or funannotate pre-screen protein databases against the genome with diamond before starting to generate exonerate alignments only for significant pairin…
fbemm updated
4 years ago