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Hello!
I'm trying to run the latest version using the four steps method, but when running the first index step, it writes to disk an index file with the name `H2009BL_corrected.index.k63.fasta`. Is…
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Hi Zhixing, I'm sorry for the additional questions, but I have two final ones regarding the output:
1. How did you group together the outputted contigs to the reference strain contigs in IGV like t…
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Hello @maickrau,
I am trying to compile MBG from source. I followed the readme and encounter two errors:
```
$ make bin/MBG
g++ -o bin/MBG obj/MBG.o obj/fastqloader.o obj/CommonUtils.o obj/main…
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If #379 can be finagled to operate like `multifasta query`, then protein queries could be used to annotate a cDBG.
One thing I've run into trouble with in annotating cDBGs with nucleotide `multifast…
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Currently running into " STEP4 -> 04.rundiamond.pl. Program finished abnormally" during the testing phase.
I am attempting to put SqueezeMeta into a singularity container where execution is done like…
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Hi,
I was wondering if anyone has used this tool to genotype multiple individuals. I'm trying to use this tool to find a sex marker in a species with no reference genome. It runs fine on a single sam…
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Hi,
I am trying your promising pipeline with _Rattus rattus_ HiFi and ONT data. I've got the following error during graph building:
```
tail 1-buildGraph/buildGraph.err
try resolve k=14873, r…
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Hi, I'm not sure if this is possible to do, but I'd like to assemble short sequences (extracted from nanopore reads, so they are noisy) into a consensus. The length of the sequences could be ~150 bp. …
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In the supplementary material for the "The complete sequence of a human genome", there is a note about a problem with the string graph algorithm. See:
> The modification fixed a problem in the pseu…
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Hi, I am trying to use some HiFiasm diploid GFAs from this public location:
https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=submissions/fc721e22-1ce2-4d38-bf88-72cf231bcb90--UC…