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Hi,
I'm not sure whether I should open the issue on the DRAM GitHub or virsorter2, but my first feeling is that my issue is related to virsorter. I'm trying to run DRAMv to annotate my contigs, but…
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Hi, Simon!
Sorry to bother you here, but I think you are my best source of help on this subject:
In your paper "[Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of v…
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Hi ablab,
Thanks for your tools!
I have a couple of questions>
1. Is plasmidVerify integrated in viralVerify? will be any difference if I run the two tools to my contigs or will that be redundan…
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Hey there,
I ran WiSH on 191 viral contigs that I have alongside 712 genome bins that I generated.
To get the associated p-values I ran the command:
`
WIsH -c predict -g "/srv/home/s4549287/27…
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Dear Mike,
Thank you for developing this useful tool! Could you please help me with one question about its application? The GitHub page describing Unlimited Breadsticks says “_Unlimited Breadsticks…
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Hi,
I am trying to extract viral information from metagenome, however, 95% of the assembled viral contigs were less than 10k, so I am thinking to map the short contigs(
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Hi Kris,
I was using VIBRANT and got an error:
```
`Traceback` (most recent call last):
File "/srv/scratch/z3336178/anaconda/envs/vibrant/bin/VIBRANT_run.py", line 623, in
with open('V…
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Thanks for the nice tool! I am using the DRAM-v to annotate my viral contigs. Although I set threads to 50, the annotation process is very slow for hmmsearch. I am wondering if this parameter does not…
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I'm using metaFlye to identify complete/circular viral genomes from metagenomes. Based on some testing using CheckV, I've found that circular contigs labeled as repetitive are often not true complete …
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I'm using MetaviralSPAdes to identify circular viral contigs that contain direct terminal repeats (DTRs). My understanding is that DTRs can occur as a result of a cycle in the graph as well as a bubbl…