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I encountered a bug in dorado that causes it to crash
When basecalling multiple models and passing POD5 data files from different runs together, the program crashes everytime
dorado basecaller s…
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The following things in the GUI are too low resolution at 4K and look blurry:
- [x] Main menu background thrive logo (we already have higher res, this accidentally? uses a low res one)
- [x] spinbox u…
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I suspect this is a bug in Tracy rather than Pearl, but Pearl is where I see it manifested. Sometimes when I have Pearl analyze a pair of ab1 trace files, it incorrectly assigns the forward sequence a…
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Hi!
I've tried several ways to download the genome of rattus_norvegicus, but it seems to always fail with a:
```
Downloading the genome of organism 'rattus_norvegicus' from Ensembl!
230 Login …
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All the SAM files created using:
singularity exec souporcell.sif souporcell_pipeline.py -i ${dir}Nine_2.possorted.bam -b ${dir}Nine_2.barcodes.tsv -f ${dir}Mus_musculus.GRCm38.dna_sm.toplevel.fa -t…
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Currently the holochain library implements tightly storing all the different data to files. This should be abstracted out and the holochain library should just be an interface, and the hc command sho…
zippy updated
7 years ago
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### Problem
For multiplexed assays, SODAR creates distinct iRODS data collections as defined by a special ISA-tab column. This logic is handled by [assay-specific plugins](https://sodar-server.readth…
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**Describe the bug**
I suspect CRISRPme is occasionally reporting off-targets generated by indels that are False-- i.e. that are not actually generated by the reported indel
As part of an analys…
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Repo:
https://github.com/simonelnahas/lfe_test
```
# mix.exs
defmodule LfeTest.MixProject do
use Mix.Project
def project do
[
app: :lfe_test,
version: "0.1.0",
…
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Hi there,
I am trying to simulate nanopore amplicon reads (~6.5 kbp longest amplicon, ~37 kb total sequence) but the simulation part seems to hang and never proceed. I was able to train an error pr…