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Hi. I installed RepeatMasker version 4.1.5 and completed configure with Dfam libraries. However, when I run repeatmasker with custom db from RepeatModeler, it creates "general libraries" in the Libr…
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INFO @ Wed, 11 Sep 2024 16:26:23: Processing GTF files ...
INFO @ Wed, 11 Sep 2024 16:26:23: Building gene index .......
100000 GTF lines processed.
200000 GTF lines processed.
300000 GTF…
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I am building a custom database according the instructions in the user guide. I would like to understand more specifically how cstranslate converts an alignment to an abstract state alphabet. In parti…
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Running the Pipeline-16S using the following command, nextflow run, but instead of producing the output we expected according with the information in the webpage, it produced several subdirectories th…
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I have run into an interesting situation when comparing assignments between nucleotide and protein databases. My databases contain NCBI bacteria, fungal, and human sequences built using kraken2-build …
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## Short description of the problem
DAS Tool needs USearch, but it's not listed in the requirements.
## anvi'o version
```
Anvi'o .......................................: marie (v8-dev)
Pyt…
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### Question Validation
- [X] I have searched both the documentation and discord for an answer.
### Question
space_name = "test"
graph_store = NebulaGraphStore(
space_name=space_name)
storag…
abc-w updated
3 weeks ago
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Dear @yinlabniu,
Thank you again for a very important tool to annotate CAZymes and identify CGCs in the microbial genomes of interest.
I am interested in examining how complete are the CGCs in my …
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Hello Team,
We are trying to upgrade our postgresql version from PSQL 14 to PSQL 16 using logical replication. Below is our setup details and steps we are using:
1. Currently we have 2 node patron…
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Hi, I was trying to assemble some endolithic green algae chloroplast 16S rRNA from a coral metatranscriptome. I have the database for multiple strains and I prepared the database following the instruc…