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Hi I am having trouble creating the ranks.qza file for the heatmap, I get this error:
(qiime2) curanga@x86_64-apple-darwin13 bioinf_job % qiime tools import \
--input-path model_4/conditionals.t…
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Hi,
have analysed some metagenomic samples using Kraken2 and I would like to visualise my taxonomic profiles using Phinch (http://phinch.org).
I used kraken-biom to transform the kraken output to…
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Is it possible to adjust this code to run in a browser?
I want to write a javascript module for my web application that allows handling of hdf5 data.
Thus I can not directly interact with files. Inste…
iimog updated
2 years ago
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Would be nice to include functionality to import a CSV file with sample metadata and allow attaching it to a `CommunityProfile` imported from metaphlan or humann.
Stretch goal - import whole thing …
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I've been performing quite a number of collapse operations, and am noticing that it can be extremely slow.
Namely, I'm trying to map deblurred reads to reference genomes and that process takes severa…
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Hi,
I am intrested in testing the picrust2 toturial an my own data, this time i am **not** using the QIIME 2 plugin.
To do so, I need a biom table and a seq.fna , However the "moving picture to…
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Hi, I tried to run the following on a cluster, but I keep getting errors when it comes to alpha diversity. I'm using singularity:
./nextflow run YAMP.nf -profile test,singularity
```
`Error ex…
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Hi
Thanks for the great tool; I was wondering if there is a possibility to regenerate phyloflash html report at a varying taxonomic rank like genus or family without having to re-run phyloflash ful…
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python 3.8.5, ribodetector 0.2.3 (installed via pip), on Ubuntu 20.04 LTS, invoked on a public dataset;
process just hangs after a few seconds, no CPU consumption at all, and can't be cancelled via C…
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Hi,
using the same command and files than before the output of the make.biom command (*.biom) is not formatted properly.
There are special/weird character everywhere, maybe an encoding issue?
Tha…