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Hi,
I installed checkm2 using the yml file, and downloaded the database without issue.
I get the following unicode encoding error in the `testrun`, but also when I try it on a small data (3 genome…
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Is there an option for circular genomes (e.g. bacteria) so that some reads are generated spanning the end and returning back to the beginning?
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I installed ` checkm-genome: 1.0.7-py36_0 bioconda` via `conda install -c bioconda checkm-genome`. When running checkm, I get the following error:
~~~
File "/ebio/abt3_projects/softwar…
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This is a feature request.
It would be great if STAR would support dynamic masking for an already built genome index.
This feature would be useful especially in calling fusions, where the genes …
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These sequences have questions surrounding them right now, but it's at least possible that this is a real event. I'm starting this thread so that there's a place to discuss this.
@thomaspeacock ha…
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This issue illustrates how NCBI Datasets API can be used to generates JSON blobs necessary for rendering filament pages (https://github.com/galaxyproject/brc-analytics/issues/130).
## Linked Ticket…
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transferred from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1653
tree: https://nextstr…
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Hello,
I’m very excited to use TEtranscripts. However, I work with a non-model genome, and there are no gene and TE annotation files available on your website for this species. Would it be possible…
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I was trying to build my own genome, but it never finished running and did not create the tsv file. I allocated 80G and run it overnight and still not finishes.
Below are files that have been gener…
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I use genomescope2.0 to estimate my diploid genome, and I use NGS_cleandata as input.It's Illumina sequence.
It is my results:
![微信截图_20210531172006](https://user-images.githubusercontent.com/7327…