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Dear GapSeq developers,
Thank you for the development of such an interesting source. I have installed it and everything went fine. I tried to run `./gapseq doall toy/myb71.fna.gz ` and I got the foll…
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Hi Jonathan,
On the website ("Download additional examples"), in
Metabolomics: Khodayari & Maranas kinetic model of Escherichia coli metabolism
Metabolomics: Gerosa thermodynamic model of Esche…
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In @2200 the conversation suggested that for N retranslocation - Storage was used first, and then Metabolic - but I don't think the code in GenericOrgan is working that way.
DM only uses Storage - …
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I generated 10,000 patients first using -m Metabolic-Syndrome-Disease and then looked at conditions. While there were many diagnoses related to coronary disease, there were none related to diabetes an…
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The following model reports an incorrect error:
"RuntimeError: Metabolic control analysis only valid for primitive reaction kinetics models. This model has events"
These are the issues:
1. Computing…
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Hello,
I am running optcom on different communities with `sol=com.optcom(strategy='original', min_growth=0.0, fluxes=False, pfba=True) ` and I would like to export automatically the growth rates of a…
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Hello,
Are we expecting Protégé to reason over 'roles', for example drug ? It doesn't seem to be:
Thanks, Pascale
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r.getFullEigenValues() issues an error message is there are events in the model, plus the error message is in any case not worded correctly:
Metabolic control analysis only valid for primitive reacti…
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Calling
r.getScaledElasticityMatrix()
gives the error message:
Metabolic control analysis only valid for primitive reaction kinetics models. This model has events
However at steady state or in fac…
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https://pubmed.ncbi.nlm.nih.gov/20227038/