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I wanted to use DIMPL to analyze the genome of Xylella fastidiosa for ncRNA, but the genome that is deposited doesnt seem to work.
Here is a copy of the code in the first Jupyter notebook and the err…
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### Context
Noticed some WA samples were being dropped due to the min-length filter (originally set to include at least 90% of the genome or `9800`nt). We're considering dropping that lower to incl…
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Could I just use this model for type classification? Because I see that a lot of work should first identify repeat et al.
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# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back up and deprecate old fasta files in BLAST
- [ ] back up and deprecate old fasta files in Hmmer
# Add new content to i5k …
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Dear team Genomescope2.
I am using the tools to understand why I have a bad novo assembly, with more than 1M of contigs and small.
I have illumina sequence of Cavia Porcellus (guinea pig), geno…
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I generated a large similarity table from ~1 million genomes using sourmash'es branchwater and tried to cluster it with Clusty. Clusty didn't finish reading the input after 6 hours, while pyLeiden fin…
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MKLau updated
6 years ago
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Hi, Felix.
I am currently utilizing Bismark to analyze DNA methylation data from the Cyprinus carpio species and am encountering issues with very low mapping efficiencies (1.7%). Could you please pro…
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LB.1.3>> Orf1a:G432S (G1559A) > S:A376S (G22688T) > S:k147R (A22002G)
Query:22688T,G1559A
Samples: 38 (South Africa 34, Denmark 2, Canada 1,Portugal 1)
First sampled on 2024-08-06 in a traveler fro…
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**Describe the bug**
When I used second-generation sequencing data (MGI_DNBSEQ platform) to optimize Nanopore assembly (using nextdenovo software) data, an error occurred. The running log is as follo…