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Please replace the taxon group "Bacteria" with the name "Prokaryotes" under Text Capture, Define Task page. This is more accurate as people will know they can also enter descriptions for Archaea and n…
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Session Info
```r
Session info ------------------------------------------------------------------
setting value
version R version 3.4.3 (2017-11-30)
system x86_64, linux-gnu
ui …
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Hi,
I have two libraries that I am having problems with the bacteria_tradis mapping for. I have used cutadapt to trim the transposon (and adapters) from the reads and selected only the reads that c…
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Hello again!
Hope you are well.
We are getting this error when running virus IDs - tested on 11709 and 2697049.
Error: invalid or unsupported assembly accession:
The accession look a bi…
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Hi , I had configured the NCBI STAT tool as per the steps mentioned in https://www.ncbi.nlm.nih.gov/sra/docs/sra-taxonomy-analysis-tool/ and was able to successfully run the input file given in Examp…
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to ensure there's no editing or mutation bugs that don't correctly update the bacteria-ness of a species
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Using real time data from the USGS and other sources, develop an alert system for when water bacteria levels are unusually high.
Need to find and add datasets/feeds.
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Hello,
this repository belongs to the publication "Deciphering transcript architectural complexity in bacteria and archaea" (https://doi.org/10.1128/mbio.02359-24) . You mention in the publication'…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
As in title, this report is forward from https://github.com/nf-core/taxprofiler/issu…
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Hi,
I have a problem with
kraken2-build --download-library bacteria --db /home/pracownik/KRAKEN_DB/Bacteria
command. I am getting an error:
rsync_from_ncbi.pl: unexpected FTP path (new se…