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Dear Tinyi Chu:
Hello!
My input of the Bulk RNA-seq is the combination of 3 batches, so I perform the cambat from SVM R packages to romve the batch effect. However, despite the original data are…
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Hi,
I have some some bulk ATAC and RNA seq in which I wanted to identify some DORCs. Is it possible to use the dorc function in this kind os data (ie importing my bulk rds into the objects)? Of cour…
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I'm reaching out regarding an issue I encountered while using RNA-bloom version 2.0.1 in conjunction with JDK17. Specifically, I'm attempting to generate a de novo assembly using 32 samples of transcr…
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Hi,
I have bulk RNA-seq data for each of my human samples, plus the scRNA-seq data that I would like to demultiplex with Vireo. Could I just clarify the workflow?
1. Genotype bulk RNA-seq sample…
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Hello,
Can we used velocyto to analysis bulk RNA seq data. We want used this wonderful methods to do the same analysis juts like the smart-seq2 pipeline you have showed us, because we just want to…
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I am having an issue using Scissor to annotate bulk RNA sequencing (of paired tumor & normal samples) with single-cell tumor sequencing.
Here is my code:
```
## import bulk RNA seq data
bulk…
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Hello!
I have a new problem: The get_xy_label_data_cnn_combine_from_database.py report an error when generate NEPDF data for the example sc-RNA seq h5 file
`python CNNC/get_xy_label_data_cnn_combine…
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I have some bulk RNA-Seq data that I want to also count reads in introns as well as exons. Is the `-soloFeatures GeneFull` option only available in STARsolo or can the regular STAR do it as well?
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To expand the MC2 data model, data type-specific metadata models should be assembled and reviewed by the community via the Request for Comments process. One strategy for implementing is as follows:
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### Description of feature
Hi, I couldn't run the pipeline on some smart-seq datasets which contains only single-end fastq files. I tried with two different samplesheets and get an error that fastq_2…