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Here is a file to edit: https://drive.google.com/file/d/1rFCjS80_wGYdA3hgzfzS9TJXDnk6xG_s/view?usp=sharing
**It contains:**
- the list of existing concepts
- a list of the values already mapped…
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**New term details**
as described in Symbiont-associated MIxS package manuscript in preparation for submission "The item added to the MIxS core takes into account the nested nature of most associatio…
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Hi Chris,
Thank you for your program !
I'm running Desman on multiple gut microbiome samples, trying to identify different species which are not E. coli and I have multiple questions regarding …
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Hi,
Thank you for this tool. I get errors when trying to download files from https://regepi.bwh.harvard.edu/circurna/bundle_v1/db/nt - for example:
java -jar COMPSRA.jar -tk -dr -ck blast_bact…
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### Branch
g1.04-contentTypes
g1.04-studyExperimentField
### Groups
Group 1 - Content Types | Ontology | Fields
### Describe
We will want to start our own Entity Type + field collectio…
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Hi:)
I ran kraken2.1.2 for my mice gut microbiome shotgun metagenomic analysis. I built a custom db by using the following command
```
kraken2-build --download-taxonomy --db refseq
kraken2-build …
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Hello
I am running concoct command:
concoct --composition_file contigs_10K.fa --coverage_file coverage_table.tsv -b concoct_output/**
which generate this error:
Up and running. Check /lustre…
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Running woltka classify as "Step 2: stratified functional profiling" with preserved --outmap in first woltka classify for taxonomy and got this error:
cat ~/plasma_woltka_strat-1.e1315562
Tracebac…
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Dear @jaspershen , you put up an impressive amount of R packages, congratulations!
I was wondering if you would be maybe interested to increase the interoperability with some of our packages for M…