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Hi, I have a question about interpreting individual AS results.
For SE it seems straight forward. The SE exon is colored orange in the PSI plot and in the transcript plot, so no problem. The A…
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Hey,
First of all thanks for this new implementation of the kallisto software with the D-reference you included in your recent paper *"Accurate quantification of single-nucleus and single-cell RNA-…
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Hi, Looking the at MEE and SE events I find that the co-ordinates in Miso event Id do not match with the Exon start:end coordinates. Is there a reason for this?
Also while trying to map coordinates …
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Hi @LuyiTian ,
Could you please comment on my error below?
Running code:
```
for i in test; do /FLAMES/python/sc_long_pipeline.py --gff3 hg38v99.Cellranger.genes.gtf --infq $i.demultiplexed.fq.g…
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Hello - thank you for engineering such a helpful tool.
I'm running through the tutorial and examining the file "gene_wise_quantifications_combined.tsv", which I understand contains genewise/transcr…
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The release notes for 2.7.6 note that GX/GN can be output for all runs, however I just tried a run of the form:
```
/home/ubuntu/programs/STAR-2.7.8a/bin/Linux_x86_64/STAR \
--outSAMtype BAM …
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Dear Dadi and team,
In order to get an unbiased transcriptome-wide view of IR, I am keen to test all transcript biotypes and not just protein_coding and processed_transcripts. Why does IRFinder exc…
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There are situations where users want to change e.g. featureCounts options, or bring in already prepared read alignments (sorted BAMs) so in such cases it would benefit to have the option to skip the …
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During the `Reading Gene Annotations` step in the `sc_long_pipeline()` workflow, I'm getting a `_Map_base::at` error.
I'm using a decompressed fastq for the BLAZE output (ran that stand-alone). I'…
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I am trying the multisample mode, and running into out of memory issues which I expected to occur, but I can only assign a certain amount of RAM on my cluster. Is there a work-around for this.
So …