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hello
I am using Bactopia for comparative analysis of genome i have 1300 fasta file analysis these through pipeline i need guidance what should i went to do and please share the steps with details.…
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### Description of bug
(bio) zhisong@zhisongs-MacBook-Air spades % bin/spades.py -s ../accuvirnew/bad_nano/hiv_50_2k.fastq -o testfasta --isolate
== Error == /Users/zhisong/Desktop/accuvirnew/b…
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The scasa cli docs state:
```
--ref,-r Provide a directory to reference fasta file
```
Doesn't https://github.com/eudoraleer/scasa/wiki/How-to-run-Scasa-for-a-new-annotation sh…
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Sim-A.diploid.fa.URL.txt
https://drive.google.com/file/d/1xtan87fLd966RPuL360w8HU_saUO-bYy/view?usp=sharing is invalid now
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Hi there,
Here is the whole process I run after dorado 5mC and 5hmC basecalling.
```
dorado aligner reference.fasta dorado_5mC_5hmC.bam > aligned.bam
samtools sort aligned.bam > aligned_sort.bam…
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I'm trying to sketch the [RVDB, the Reference Viral Genome Database](https://rvdb.dbi.udel.edu/). The clustered file is ~600 MB.
```
sourmash scripts manysketch C-RVDBvCurrent.manysketch.csv -o C-…
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**Steps to Reproduce**
1. Switch to Macro mode
2. Open from Clipboard >> Select Sequence and Peptides
3. Add CCCAAATTT >> Add to canvas
4. Connect any first and last peptides
![image](https://git…
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I have a workflow which uses kmc to count all kmers in an extremely large dataset of about 250,000 fasta files. The workflow was originally built with v3.2.1 of kmc, but stalled when I updates to v3.2…
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I am running into "could not find CIFs" error when running `run_from_fasta.py` file and please find the command below.
Attached is the screenshot for the same
Command I am running:
`python …
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Hello, Model angelo fails when using fasta files. I also see the following user warning message:
TypedStorage is deprecated. It will be removed in the future and UntypedStorage will be the only stora…
ezbie updated
2 months ago