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## chord diagram
- [x] chordDiagram: Color gradients between groups #313
- [ ] In circos.heatmap, support border.color as a vector #308
- [ ] calc_gap() when it is not a two-group chord diagram …
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Testing for #9, the good news is using the --compliant switch for PROKKA apparently allows the script to continue beyond where it would previously crash, but then clinker engages in slow, one-thread, …
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We discussed this briefly in person on Monday 14 October, but to put this in writing:
The details differ but most if not all of the ANI methods have some threshold below which they find no meaningf…
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cc @bluegenes
working version here, https://hackmd.io/-sFCAl_3T1qSqH_GvV_pvw - add stuff there, or add thoughts in comments below, but please do not edit this header except to update it with the c…
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When I used LRA to align the HG002 ONT data and ran the following code, I did not get any results. However, other alignment software worked fine.
```
/home/xxx/00.Software/SVDSS/SVDSS_linux_x86-64 i…
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Hi,
I found the list missed some recent papers:
>[Multimodal Integration] [2022 Nature Biotechnology] Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
…
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**Original report ([BitBucket issue](https://bitbucket.org/hoffmanlab/segway/issues/11)) by Eric Roberts (Bitbucket: [ericr86](https://bitbucket.org/%7Bcd8c1fe0-28ca-45fb-8ef9-48090b42bb80%7D/), GitHu…
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Hi @pchaumeil
I have a confusion regarding the ANI values that the GTDB-tk gives for the classification of the MAGs.
1. which one should I consider the ANI values of the MAGs with the referenc…
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Hello, I would like to ask you some questions. I plan to use nanovar for structural variation detection. I have three ONT datasets in total. The first two ran normally, but the third one encountered …
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Hello, I am trying to reproduce some of the results from the paper. I am currently trying to separate all cell line datasets. I have been able to follow the instructions in the supplementary section t…