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this is
this is the error code when reaching the multifastq, this is the same pipeline as #1021
I removed some entries to make it readable.
take note the version of my snakePipes
```bash
$snak…
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Hi Dr. Liu,
Thanks for your effort in the development of this software.
I have a quick question about mapping with samples without GLORI treatment.
As the method you describe:
4.4 mapping with sam…
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Is it possible to implement a utility function within the Salmon binary that converts the transcript mappings to genome coordinates of an input GTF file?
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I am trying to map long reads to whole genome. I have graph of each chromosomes separately built using vg construct.
How can I map the reads to all the chromosomes and find out to which chromosome t…
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Hi,
Thank you for putting these reference genomes together! They've been very helpful for my work.
I'd like to use hg38-rDNA_v1.0.fa to map an RNAseq dataset using STAR. How should the annotation …
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This issue aims to model simulation agent parameters using a DNA and genes-inspired approach. By structuring agent parameters, such as “learning rate,” as genes within a genome, we can encode, decode,…
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Hi ntSynt developer,
If I understand correctly, ntSynt uses k-mers to infer homology between genomes. I could be mistaken, but it seems that ntSynt works well on simple and closely related genomes,…
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I operate according to the protocol, but there is an error, can someone kindly help me to solve it
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Hi, thanks for your great work. It seems that gpn model is not supported (gpn-msa, its new version supports human genome). Would you please consider including it? Thanks.
```
Traceback (most recen…
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Dear all,
I'm here for the first time in the community and have been trying for some time to obtain a pangenome to use as a reference for mapping short reads using `vg giraffe` and subsequent varia…