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Hi everyone,
I currently running Guppy for the basecalling.
I found that the option '--fast5_out' was removed from Guppy 6.5.7.
Can anyone provide some information of why this option was not in…
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Hi,
I am really sorry because I have seen many issues about problems with initialization of the guppy server, but I am not able to solve it.
As it is described in the README, I used this code:
…
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Yesterday megalodon stopped working, and now consistently gives the error:
ERROR: Guppy server initialization failed. See guppy logs in [--output-directory] for more details.
However when I run …
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As reported in https://github.com/NCATSTranslator/Feedback/issues/953, [UMLS:C0920288 "C-KIT Gene"](https://uts.nlm.nih.gov/uts/umls/concept/C0920288) should be a synonym of [NCBIGene:3815 "KIT"](http…
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Hi Dorado team,
I have performed dorado duplex calls, then from the resulting BAM file, I have used the below command to only compile a bam file consisting of duplex calls:
samtools view recovered…
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I cant seem to find `GraphMap2` on BioConda which also means the associated BioContainer wont exist. It would be nice to be able to use this in the pipeline because it has some updated functionality…
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Hello,
I'm encountering connection errors with ReadBouncer 1.2.2 when trying to connect to Guppy basecall server. I am getting the following error messages, depending on the host I provide my confi…
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### Describe the bug
The mobile website version is slow when submitting answers and the correct answer is not synchronized with the PC website version.
### Steps To Reproduce
- Go to the http…
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This is not a issue related to this github repository, but I wonder if you also had a similar error when basecalling on the Ecoli benchmark fast5 files:
Fast5 read file is invalid. Read is missing …
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# Issue Report
## Please describe the issue:
When I run command in command line, I can see the verbose command output. However, when I redirect the command output to a log file, there is nothing…