-
One thing I wanted to note is that currently this only works with docker as executor (ie not with conda only) because the MARKERS process requires hmmpress'ed files. @Sidduppal This also needs to be a…
-
## The need
![image](https://user-images.githubusercontent.com/10922896/179562780-7800f326-3dff-4cb2-b515-3ffee430f96b.png)
## The solution
Make `anvi-script-kofam-accessions-to-hmms-directory`…
-
Hi,
I have been looking for ways to improve _de novo_ transcriptome assemblies from non-model species by using reference information from amino acid alignments (i.e. HMM profiles) of orthologous ge…
-
Hi CongLab!,
I am curently trying to use you'r tool!
I tried at first using it on a test directory with 15 proteins, I provided the json and pdb files as needed and it worked as it should.
now I a…
-
#### Summary:
The section on HMMs in the user's guide should be rewritten to use the new(ish) built-ins
#### Description:
Replace this user's guide section: https://mc-stan.org/docs/2_29/sta…
-
:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki).
## Expected Behavior
It is said that hhsuitedb can build a HMM DB from only HMMs (see the 'or')
Buil…
-
Hidden Markov Models are quite common in time series analysis. Since they involve discrete variables, HMC is not always appropriate, although we can still apply HMC for continuous parameters of an HMM…
yebai updated
2 months ago
-
Hello METABOLIC developers,
I am particularly interested in the biogeochemical cycling diagrams that METABOLIC produces, I think it’s a great idea.
However, I wonder how does METABOLIC determi…
-
Hi,
Thanks for developing deltaBS.
I am having a bit of trouble prepping my data and was hoping you could clarify a few things.
The background: I have 8k Klebsiella genomes I want to generate D…
-
I've tried using the standard alphafold2 setup via docker (converted to a singularity container) via the setup described at https://github.com/kalininalab/alphafold_non_docker, and both result in the …