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From branch 115 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C23039G, T22928C, C21627A(S:T22N, F456L, Q493E)
Or JN.1.16+C23039G,C21627A(S:T22N,Q493E)
Now usher…
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### Context
The glycoprotein complex (GPC) is the only surface protein of the Lassa virus (LASV) and plays a crucial role in mediating entry into host cells. It is also a primary target for neutr…
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S:K478T is now trending globally even if its exact share is not easy to establish due the confounding of missing coverage.
Here i want to propose a mini saltation S:K478T lineage under KP.1.1.3
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Hi @georgeoshardo - during some random runs of our data generation script, we hit this error. I'm still not exactly sure what `exp_node` stands for - what do you think would cause this to happen? I ca…
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**Describe the bug**
Currently datagrid methods are not consistent with the way they calculate row identifier. Examples:
1. Using lineage, which causes bugs as top level rows don't have lineage …
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Create a lineage typing tool for UK lineage. Perhaps focus on lineages that are recent then build trees for these independently.
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LZ.2.1 [C29642T(Orf10:Q29*)]+T2746C, T3055A, T3142C, T22585C, T25496C, G362A, A22995C( Orf1a:D33N,D930E, S:K478T(rev), Orf3a:I35T)
GISAID query: C29642T,T25496C, G362A
No. of seqs: 2(USA 1(from Ja…
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As pointed out in #11, this isn't defined unless we actually have a minadcl tree. At the very least for these trees we would select the regular `multiplicity` by default, but preferably, `cluster_mult…
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It builds fine without the GMS env variable. This is not with docker, this is under Ubuntu 22.04.
```
(.lineage_venv) administrator@Android-VM:~/android/lineage$ m -j8 bacon
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Query: A27507C, T22928C, C21998A, G26567T
First sequence: 2023-03-27
Latest sequence: 2023-08-16
Countries: Austria, Canada, England, Northern Ireland, Scotland, Ireland, France, Japan, Netherlands…