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Dear all,
I am seeing errors while uploading some Zarr files:
```
PATH SIZE ERRORS UPLOAD STATUS …
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I wanted to start a discussion about how we organize data and how it conforms to the OME-Zarr specification. Namely, I wanted to ask "should our spectral channels continue to be independent zarr files…
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Here is an overview of current MoBIE projects, which have ome.zarr data and samples:
## Spatial Transcriptomics Data
https://github.com/mobie/mouse-embryo-spatial-transcriptomics-project
This…
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Collection of notes for how to achieve using n5-viewer to load OME-Zarr.
[Zulip discussion](https://imagesc.zulipchat.com/#narrow/stream/327326-BigDataViewer/topic/View.20OME-Zarr.20v0.2E4.20in.20B…
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idr0001 has 192 x 96-Well Plates, 6 acquisitions each.
1 Plate converted [below](https://github.com/IDR/idr-metadata/issues/683#issuecomment-1886903270) is 47 GB.
Approx 4.5 TB in total.
bioformats…
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**Describe the Error**
Whenever `data_to_use` is set to "aggregate", `createGiottoXeniumObject` returns the following error. The breast cancer dataset in the vignette doesn't work either. "subcellu…
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During the DL course, @edyoshikun needed to re-chunk the OME-Zarr store to improve the data i/o efficiency during training.
Ed, please turn your code into an `iohub rechunk .zarr` CLI that conver…
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Hi,
I have an ome.tiff image from Xenium instrument and I am using cellpose to do segmentation. However, the file is too heavy and I can not do so even under server access.
I would be thankful to kn…
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@constantinpape @martinschorb @jhennies
Would it be an option to deprecate support for loading OME-Zarr via BDV/XML? Is this still useful? Do we know which projects are actually doing this? If we k…
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See https://github.com/ome/ome_zarr_test_suite/pull/11
Currently `ome-zarr-py` doesn't validate data, e.g. checking that essential metadata is present or that data is expected dimensions.
Maybe …