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Transferred from sars-cov-2-variants/lineage-proposals#2025
KP.2.3> C28714T> T7438C> T18438C> A25983T(Orf3d-2:K6*)
Query: C8293T, T18438C, A25983T
Query for sequences without T18438C: -T18438C, A25…
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Dear all
I just realized that the Cumulative Prevalence for different lineages in your superb web resource seems to be calculate by #GISAID_sample_with_lineage_X/#GISAID_sample. Generally this seem…
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I've noticed that the frequency panel is very laggy even on high-end hardware when there are 2000 possible colorings (as for Nextclade lineages) in the Europe build: https://nextstrain.org/groups/nehe…
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## XBB.1.5 lineage tracker
### "FLippeR Combo"
- [ ] XBB.1.5 [T17124C > T23018C] > C27059T > C28005T(ORF8:P38S) > C1973T, G22927T(**S:L455F**), T22928C(**S:F456L**) > C22624T > G11266T(ORF1a:L3667…
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Please forgive me for my ignorance if this is already implemented - Is there a method to download the mutations of variants through the API? I noticed 2 days ago the download button on lineage reports…
tyhho updated
3 years ago
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### Context
`augur clades` currently places clades by finding the biggest branches on a tree that satisfy each clades defining mutations as provided by the user.
This method has a few downsides:…
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Hello,
I have been using Pangolin to evaluate my tool on a simulated dataset.
However, I cannot get the lineage that I expect with pangolin. I would be glad if you could have a look why that cou…
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Suggested in #279; related to #265 and #258.
Would require changes to API and front-end.