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Good day!
I am interested in using your tool and would like to know whether it is suitable to integrate paired and unpaired multiomic data. In this case, I have samples with only scRNA and scATAC a…
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Hi,
Thank you for developing this incredibly useful pipeline. It has been instrumental in my scRNA-seq analysis work. I have encountered an interesting issue while using the script provided: when u…
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### Description of feature
As discussed in the Slack Channel for scrna-seq on 23rd September 2022:
It will be good to allow --expect-cells in the run with --aligner cellranger option for scrnaseq …
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Hello, thank you for this tool! It would be very useful for me as I have scRNA-seq, scATAC-seq and proteomic data.
I would like to incorporate the PPI data into the GRN.
I saw this information in…
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Hi,
Thanks for this super nice method and the pipeline. In the minimap2 bam outputs, I don't see any junction reads even though minimap2 is run with the `-x splice` parameter. Sashimi plots are all…
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**User story**
As a user of the scRNA Core Cell Extraction pipeline, if I have made multiple sets of child tubes from the LRC PBMC Bank plate, I would like to be able to download the driver file for …
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Hi!
Thanks for sharing this package!
I have run the pipeline taken from the tutorial on my own data. I have visualised the CNV scores using UMAPs and in most of the cases results look very similar…
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Hello,
I've been using your software to much effect for scRNA for sometime now, and was hoping to bridge into scATAC. However, I'm running into an issue with the beta binomial estimation step. Namely…
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### Description of feature
Hello, thanks for the great work with this pipeline. I would like to try to use this pipeline to call somatic mutations in single cell rna-seq data. I have my own WGS refer…
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Hi,
I'm trying to install Taiji from the source code in our CentOS server using stack and I'm getting requested to give my github credentials during the installation:
```
[gascui@login02 Taij…