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I am trying to reproduce the example provided in:
https://github.com/bulik/ldsc/wiki/Heritability-and-Genetic-Correlation
In particular, I downloaded both the summary statistics file:
wget www.me…
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Tashrif, I think I've seen you only set the "earliest" date and run a filter successfully. This doesn't work for me and I need to set the "latest" date too to get a date filter to run. Maybe it's a …
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The way we wrote this algorithm without Pandas, does not hold true when there is a line break within a cell. We noticed this issue with `ampscz_pps01_baseline.csv`.
So the suggestion is to verify l…
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Hi there,
FYI, when attempting the example Heritability and Genetic Correlation on the wiki, the first two commands do not work:
# Download Data
wget www.med.unc.edu/pgc/files/resultfiles/pgc.c…
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Heritability and Genetic Correlation Tutorial on:
https://github.com/bulik/ldsc/wiki/Heritability-and-Genetic-Correlation
Data required to be downloaded using:
wget www.med.unc.edu/pgc/files/resu…
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In rc-predict-lochness:
`AD00051.Prescient.Run_sheet_eeg_1.csv` reading is successful but `AD00067.Prescient.Run_sheet_eeg_1.csv` fails
```
File ~/miniconda3/lib/python3.8/site-packages/pandas/_l…
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Criteria:
Each interview session will have:
1. one of `SPLLT-*` or `*_SPLLT*`
2. and one `*_NOSPLLT_*`
If that is not the case, we should show the number of `#1` and number of `#2` in data f…
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Awaiting Larry's opinion:
https://github.com/AMP-SCZ/utility/blob/f21f2605e7d0f170234dcd70f97be8bb62e2ad20/rpms_to_redcap.py#L55-L66
Then we shall probably change the first if condition to:
> i…
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We need to save log files for METAL
## Processing file 'Phase2_SCZ_16_900.gz'
## WARNING: Bad alleles for marker 'chr10:3315237:INDEL_cg25898111', expecting 'd/i' found 'ac/gc'
## WARNING: Bad a…
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When I run "python -m jcvi.graphics.synteny blocks scz_zj2.bed blocks.layout", the last step of MCScan, it got a error that "IndexError: list index out of range". The details are as follows:
[18:01:…