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Hello,
I have been using this pipeline for a while (thanks to the developers!) and I am very used to its scripts but this time I cannot get around this error. When running `concat_alignments.py` fo…
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Hi,
I am using hifiasm 0.19.8-r603 to do human genome assembly using hifi-only data. After the assembly, I found there is a interchromosomam misjoin reported by `paftools.js misjoin -c centromeres…
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Hi Jakob! This thing looks cool, thanks!
I recognize that it might not be a common usecase for `alen`, but I would routinely use it to browse alignments in an `ssh` session through `tmux` on macOS.…
taprs updated
1 month ago
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In AliTVTeam/AliTV-perl-interface#143 @wangshun1121 requested support for alignments of sequence parts instead of alignments of the complete sequences. Therefore, it would be nice, to support offsets …
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Dear Pauline,
I have been trying to use make-SIFT-db-all.pl to create a database. It all seems to be going well, and files are being created in the directories singleRecords, fasta and subst (the …
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User shall have the ability to view details about all matches (alignments) of the search query to the certain sequence from the BLAST search results.
For that, user should click the certain row (se…
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Dear AnchorWave team,
I am currently working on a project that involves calculating identities of 1M window size pairwise alignments in whole genome comparisons. I understand that AnchorWave is des…
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Hi All,
I'm using HHblits in the context of Porter5 to help predict secondary structure. Porter executes HHblits with the flags -cpu 2 -n 3 -maxfilt 150000 -maxmem 8 -v 2. My system runs Pop!_OS li…
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Hi,
I'm encountering an error while trying to run dbCAN, and it appears to be related to the output generation. Any assistance you could provide would be greatly appreciated.
I've installed dbca…
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Hi Felix,
I have a couple of questions regarding Bismark. I'm sorry if they are stupid questions; I am fairly new to WGBS data and Bismark analysis (or to bioinformatics in general).
We are rese…