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look for clustering benchmark datasets (from various domains) to test the approach and put the result into the documentation)
→ Clustering benchmark papers
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Hi, I am working on a single cell DNA dataset (10x genomics) and I managed to run cellsnp-lite and vireo and now I am generating the clustering using the example [here](https://nbviewer.org/github/sin…
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**Is your feature request related to a problem? Please describe.**
Embeddable views of Cell Ranger HTML summary page on GigaDB. Cell Ranger is a set of analysis pipelines developed by 10X Genomics th…
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**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
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Status: Draft
Note: Putting this here as a place to park a potentially promising idea
Background - we have no objective measures of granularity in the Cell Ontology, although we are sometimes aske…
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It's a wonderful work, I have found all datasets but mouse brain dataset on https://figshare.com/articles/dataset/Benchmarking_atlas-level_data_integration_in_single-cell_genomics_-_integration_task_d…
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- Link to publication: https://www.biorxiv.org/content/10.1101/2021.06.04.447088v1
- Title of publication: Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression…
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Hi! Congrats for the study! Very nice!
I am integrating more data into your TICA atlas and I am following the approach you use here: https://github.com/Single-Cell-Genomics-Group-CNAG-CRG/Tumor-Imm…
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Hi HTStream-Team,
is it possible to use your toolkit in paired-end mode, but actually apply QC functions (polyATrim, QWindowTrim) only on one pair (e.g. R2)?
I'm asking because I tried cleaning p…
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