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Hello,
I want to kindly inform you that the dependencies of the Gentb-snakemake are not updated which caused me not to be able to set up the Conda environment. I could solve the issue and install t…
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This will be for learning/demonstration purposes so that we can build on it for further parts of the workflow. The rule could be something that simply loads the datasets into the pytorch library and p…
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I would like to be able to debug snakemake workflows in IDEs. Is this already possible?
Also see
https://stackoverflow.com/questions/78677266/how-to-debug-scripts-for-pypsa-eur
Related:
ht…
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copy CI pipeline from https://github.com/snakemake-workflows/snakemake-workflow-template/tree/main/.github/workflows
implement and test
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Hello,
I'm trying to run the snakemake workflow for DS analysis method comparison.
When I run `snakemake` in the terminal, I get the following error:
`FileNotFoundError in line 25 of /home/Pycharm…
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https://github.com/nickjstevens/analysis-workflow/blob/master/Snakefile
https://bitbucket.org/snakemake/snakemake/src/ecd26cd06ca7?at=master
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Hoi,
after a long while, I tested again and apparently the previous fix stopped working. That does not make any sense, so probably, I am doing something wrong.
With
```console
$ cat ~/.conf…
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Hi Gavin
I've been running the Titan snakemake workflow and would be grateful if you could clarify a few things for me:
1. In the optimalClusterSolution.txt file, what does the "...cluster_X_" a…
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Hi,
I ran ROADIES with test data but failed. I don't know what is the problem. Here is the error info:
rm: cannot remove 'output_files': No such file or directory
Building DAG of jobs...
Unloc…
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**Snakemake version**
Tested with v8.18.1
Works with v7.30.2
**Describe the bug**
A collect rule that aggregates files from two sequential checkpoints fails to output all files in the …