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This repo is empty and I assume the actual repo for sra toolkit is https://github.com/ncbi/sratoolkit.
Maybe remove this one to avoid confusion? Thanks.
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Hi Daniel,
i am using Fusioncatcher, 0.99.4b version i could run fine on the test samples with the same build Ensembl 79 vesion. but when i ran with my RNA-seqdata, half way it threw Error saying cou…
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I'm stumped on this one. I've compiled and installed ncbi-vdb and ngs from here, and make under sra-tools goes pretty far, but fails here:
```
make[3]: Entering directory `/root/ncbi-outdir/sra-tools…
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This will be useful especially for saving the transfer for big eukaryote and metagenome datasets.
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I have the following error when building a `debug` release:
``` bash
# ...
./sratoolkit/libs/search/agrep-dp.c: In function ‘dp_find_begin’:
./sratoolkit/libs/search/agrep-dp.c:616:13: warning: varia…
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Sorry to bother you again, but I can't get past an error concerning brew. The command was:
bcbio_nextgen.py ../config/project_edited.yaml
The error was:
[2013-12-19 08:51] Preparing 898_131216_testr…
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Hello,
I am trying to report an issue for the SRA Toolkit, specifically the sam-dump command. The command works if only dumping aligned sequences, but fails when dumping unaligned sequences that are …
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Jonathan suggested using the best-understood microbial ecosystem for the paper. We could analyze enterotypes, and at the very least should analyze the HMP mock communities. HMP mock community data is …